Science::Bioinformatics::Genomics

A nightly library for viral genomics

DNA, RNA, and amino acid sequence types and functions

Microbiology friendly bioinformatics Rust functions

Save and load common biology file formats

Read conventional genomic file formats as data frames and more via Apache Arrow.

Performance critical tools for genomic interval analysis.

fuzzyfold's nearest neighbor free energy evaluations.

fuzzyfold's secondary structure representations.

fuzzyfold's stochastic secondary structure simulations.

Library for working with nucleotide and amino acid sequences

Nucleic acid secondary structure kinetics.

A fast and memory-efficient FASTX PCR deduplication tool

Gene-field extraction and deterministic signal transforms for spatial transcriptomics.

Deterministic spatial math and contour primitives for transcriptomics 3D pipelines.

Deterministic spatial transcriptomics IO primitives for Kira.

Bit packed and well-typed biological sequences

Deterministic ribosome and translation-state quality control for single-cell RNA-seq.

Python bindings for microBioRust Microbiology friendly bioinformatics Rust functions

Principal component computation using SVD and covariance matrix trick

Performance critical tools for genomic interval analysis. This is the CLI

Deterministic 3D mesh, contour, and export primitives for spatial omics fields.

Deterministic, explainable secretion-state QC for single-cell expression data.

Pure‑Rust port of ntHash

Microbiology friendly bioinformatics Rust functions

A program that collapses CIGAR strings from SAM/BAM files into shorter human-readable string

Extracts transcript sequences and gene maps from genome FASTA files using GFF3 annotations.

Deterministic, explainable autophagy/lysosome dependency QC for single-cell expression data.

Reproducible bio-data manager with a project-local store and a shared global cache. kira-bm it's like npm/cargo/pip for bioinformatics.

Deterministic, explainable ligand-receptor microenvironment interaction scoring for single-cell expression data.

Deterministic orchestrator for spatial transcriptomics: IO, field transforms, core math, and 3D export.

Rust bindings for abPOA: Adaptive Banded POA

Command-line interface for deterministic spatial 3D mesh and contour export.

BAM/Mod BAM parsing and analysis tool with a single-molecule focus

Automatically generated FFI definitions for abPOA

Microbiology friendly bioinformatics Rust functions

Interactive GPU viewer for spatial 3D meshes, contours, and vector fields.

The fast, reliable multitool of FASTQ processing

Rust implementation of R/rrBLUP package for mixed model analysis

Learn the properties of a FASTA sequence database and simulate sequences in a Markov process

Rust implementation of strobemers

Rust-powered BAM depth extraction with Python bindings

Rust bindings for the digest library

VCF manipulation based on FORGe ranking

A CLI tool for performing PCA on genomic data from VCF files.

CLI to generate FASTA file statistics (masking, GC content, etc.).

Convert an amino acid alignment into a nucleotide alignment.

High-throughput, extensible SAM/BAM pileup generator

Microbiology friendly bioinformatics Rust functions