Science::Bioinformatics::Genomics
zoe
0.0.26 ExperimentalA nightly library for viral genomics
na_seq
0.3.15 GrowingDNA, RNA, and amino acid sequence types and functions
microBioRust
0.1.3 GrowingMicrobiology friendly bioinformatics Rust functions
gtars
0.8.0 GrowingPerformance critical tools for genomic interval analysis.
ff_energy
0.4.0 Experimentalfuzzyfold's nearest neighbor free energy evaluations.
bio_files
0.4.9 ExperimentalSave and load common biology file formats
oxbow
0.7.0 GrowingRead conventional genomic file formats as data frames and more via Apache Arrow.
ff_kinetics
0.4.1 Experimentalfuzzyfold's stochastic secondary structure simulations.
ff_structure
0.3.0 Experimentalfuzzyfold's secondary structure representations.
fuzzyfold
0.4.1 ExperimentalNucleic acid secondary structure kinetics.
gtars-cli
0.7.0 ExperimentalPerformance critical tools for genomic interval analysis. This is the CLI
microbiorust-py
0.1.5 ExperimentalPython bindings for microBioRust Microbiology friendly bioinformatics Rust functions
bio-seq
0.14.8 GrowingBit packed and well-typed biological sequences
fastdedup
1.0.1 ExperimentalA fast and memory-efficient FASTX PCR deduplication tool
efficient_pca
0.1.8 GrowingPrincipal component computation using SVD and covariance matrix trick
microBioRust-seqmetrics
0.1.3 GrowingMicrobiology friendly bioinformatics Rust functions
nucs
0.2.0 ExperimentalLibrary for working with nucleotide and amino acid sequences
kira-spatial-field
0.1.0 ExperimentalGene-field extraction and deterministic signal transforms for spatial transcriptomics.
kira-secretion
0.1.1 ExperimentalDeterministic, explainable secretion-state QC for single-cell expression data.
nthash-rs
0.1.3 ExperimentalPure‑Rust port of ntHash
kira-riboqc
0.1.2 ExperimentalDeterministic ribosome and translation-state quality control for single-cell RNA-seq.
kira-spatial-core
0.1.0 ExperimentalDeterministic spatial math and contour primitives for transcriptomics 3D pipelines.
thaf
0.0.5 ExperimentalExtracts transcript sequences and gene maps from genome FASTA files using GFF3 annotations.
asmdna
0.0.2 ExperimentalDigital Evolution framework through a interperted mirco-assembly language within a multi-threaded virtual machine cluster.
kira-autolys
0.1.1 ExperimentalDeterministic, explainable autophagy/lysosome dependency QC for single-cell expression data.
kira-microenvironment
0.1.2 ExperimentalDeterministic, explainable ligand-receptor microenvironment interaction scoring for single-cell expression data.
kira-spatial-io
0.1.0 ExperimentalDeterministic spatial transcriptomics IO primitives for Kira.
abpoa-rs
0.2.0 GrowingRust bindings for abPOA: Adaptive Banded POA
nanalogue
0.1.9 ExperimentalBAM/Mod BAM parsing and analysis tool with a single-molecule focus
abpoa-sys
0.1.1 GrowingAutomatically generated FFI definitions for abPOA
microBioRust-heatmap
0.1.1-alpha GrowingMicrobiology friendly bioinformatics Rust functions
kira-biodata-manager
0.1.2 ExperimentalReproducible bio-data manager with a project-local store and a shared global cache. kira-bm it's like npm/cargo/pip for bioinformatics.
mbf-fastq-processor
0.8.1 ExperimentalThe fast, reliable multitool of FASTQ processing
rrblup-rs
0.1.0 ExperimentalRust implementation of R/rrBLUP package for mixed model analysis
markov_genome
0.1.0 ExperimentalLearn the properties of a FASTA sequence database and simulate sequences in a Markov process
strobemers-rs
0.1.0 ExperimentalRust implementation of strobemers
digest-rs
0.1.0 ExperimentalRust bindings for the digest library
rustbam
0.2.0 GrowingRust-powered BAM depth extraction with Python bindings
forgers
0.1.1 GrowingVCF manipulation based on FORGe ranking
fastats
0.1.0 ExperimentalCLI to generate FASTA file statistics (masking, GC content, etc.).
genomic_pca
0.0.1 ExperimentalA CLI tool for performing PCA on genomic data from VCF files.
aa2nucaln
0.1.1 ExperimentalConvert an amino acid alignment into a nucleotide alignment.
microBioRust-microSeqIO
0.1.1 GrowingMicrobiology friendly bioinformatics Rust functions