Science::Bioinformatics::Proteomics

Save and load common biology file formats

DNA, RNA, and amino acid sequence types and functions

A library to handle proteomic mass spectrometry data and match peptides to spectra.

CLI tool for physics-informed protein robustness and fragility analysis under environmental conditions (pH, oxidative stress, temperature)

Deterministic, explainable proteostasis QC for single-cell expression data.

Deterministic, explainable splicing QC for single-cell expression data.

Deterministic Rust CLI for MMseqs2-like approximate high-throughput sequence clustering/search workflows.

A library to deisotope and charge state deconvolve mass spectra

A library to deisotope and charge state deconvolve mass spectra

Deisotoping and charge state deconvolution of mass spectrometry files

Rust implementation of the A3 (Amino Acid Annotation) format — parse, validate, and inspect A3 JSON files

Molecule data structures for computational chemistry and drug discovery