Science::Bioinformatics::Proteomics

DNA, RNA, and amino acid sequence types and functions

Save and load common biology file formats

A library to deisotope and charge state deconvolve mass spectra

Low-level, streaming mmCIF/BinaryCIF parser focused on protein coordinates.

A library to deisotope and charge state deconvolve mass spectra

A library to handle proteomic mass spectrometry data and match peptides to spectra.

Deisotoping and charge state deconvolution of mass spectrometry files

Deterministic, explainable proteostasis QC for single-cell expression data.

Bit packed and well-typed biological sequences

Deterministic, explainable splicing QC for single-cell expression data.

Rust implementation of the A3 (Amino Acid Annotation) format — parse, validate, and inspect A3 JSON files

Deterministic Rust CLI for MMseqs2-like approximate high-throughput sequence clustering/search workflows.

Reproducible bio-data manager with a project-local store and a shared global cache. kira-bm it's like npm/cargo/pip for bioinformatics.

CLI tool for physics-informed protein robustness and fragility analysis under environmental conditions (pH, oxidative stress, temperature)

Handle fragmentation of (complex) peptidoforms.

Align peptidoforms while with mass-based alignment.

Core logic for handling massspectrometry in Rust.

Handle all kinds of identified peptidoform files.