Science::Bioinformatics::Sequence Analysis

A nightly library for viral genomics

DNA, RNA, and amino acid sequence types and functions

Microbiology friendly bioinformatics Rust functions

Save and load common biology file formats

A viewer of multiple sequence alignments, with a text user interface

Read conventional genomic file formats as data frames and more via Apache Arrow.

fuzzyfold's nearest neighbor free energy evaluations.

High-performance FASTQ reader with mmap-first design. Supports plain, gzip, and BGZF inputs; optional multi-line parsing; and explicit paired-end reading.

Bindings to the C library libsais for suffix array construction

fuzzyfold's secondary structure representations.

FastQC-compatible QC tool written in Rust

Generate images of the Arecibo message with a user-provided population and genome size

A library to handle proteomic mass spectrometry data and match peptides to spectra.

fuzzyfold's stochastic secondary structure simulations.

Raw bindings to the C library libsais for suffix array construction

Nucleic acid secondary structure kinetics.

A fast and memory-efficient FASTX PCR deduplication tool

Unified short- and long-read sequence aligner written in Rust 2024. It combines minimap2-style minimizers and chaining with BWA-MEM2-style exact-match anchoring and output semantics. The goal is drop-in compatibility with bwa-mem pipelines while supporting long reads efficiently.

Bit packed and well-typed biological sequences

Python bindings for microBioRust Microbiology friendly bioinformatics Rust functions

A small and fast FM-Index implementation

View, edit, and explore multiple sequence alignments in your terminal

Count the occurances of structured sequence reads and compare to an expected library

Pure‑Rust port of ntHash

Microbiology friendly bioinformatics Rust functions

A program that collapses CIGAR strings from SAM/BAM files into shorter human-readable string

Rust tools (with Python bindings) for sequence analysis

A tool for generating sequence locators for HIV/SIV sequences, resembling the functionality of the LANL HIV-Locator tool.

An implementation of the SAIS algorithm for suffix array construction

Rust bindings for abPOA: Adaptive Banded POA

BAM/Mod BAM parsing and analysis tool with a single-molecule focus

Automatically generated FFI definitions for abPOA

Microbiology friendly bioinformatics Rust functions

fqkit: a simple and cross-platform program for fastq file manipulation

Rust CLI for preprocessing single-cell RNA-seq count matrices.

Package to download NCBI genome data and metadata

Handle fragmentation of (complex) peptidoforms.

Align peptidoforms while with mass-based alignment.

Access the IMGT database from Rust

Core logic for handling massspectrometry in Rust.

Learn the properties of a FASTA sequence database and simulate sequences in a Markov process

Rust implementation of strobemers

CLI tool for physics-informed protein robustness and fragility analysis under environmental conditions (pH, oxidative stress, temperature)

Rust bindings for the digest library

Convert an amino acid alignment into a nucleotide alignment.

Microbiology friendly bioinformatics Rust functions