Science::Bioinformatics::Sequence Analysis

fuzzyfold's secondary structure representations.

fuzzyfold's stochastic secondary structure simulations.

fuzzyfold's nearest neighbor free energy evaluations.

Nucleic acid secondary structure kinetics.

Rust implementation of strobemers

Rust bindings for the digest library

Automatically generated FFI definitions for abPOA

Rust bindings for abPOA: Adaptive Banded POA

An implementation of the SAIS algorithm for suffix array construction

Generate images of the Arecibo message with a user-provided population and genome size

Package to download NCBI genome data and metadata

Save and load common biology file formats

fqkit: a simple and cross-platform program for fastq file manipulation

Microbiology friendly bioinformatics Rust functions

DNA, RNA, and amino acid sequence types and functions

Microbiology friendly bioinformatics Rust functions

Raw bindings to the C library libsais for suffix array construction

Bindings to the C library libsais for suffix array construction

A tool for generating sequence locators for HIV/SIV sequences, resembling the functionality of the LANL HIV-Locator tool.

Pure‑Rust port of ntHash

A library to handle proteomic mass spectrometry data and match peptides to spectra.

A small and fast FM-Index implementation

Rust CLI for preprocessing single-cell RNA-seq count matrices.

Convert an amino acid alignment into a nucleotide alignment.

A program that collapses CIGAR strings from SAM/BAM files into shorter human-readable string

Microbiology friendly bioinformatics Rust functions

View, edit, and explore multiple sequence alignments in your terminal

Learn the properties of a FASTA sequence database and simulate sequences in a Markov process

Microbiology friendly bioinformatics Rust functions

CLI tool for physics-informed protein robustness and fragility analysis under environmental conditions (pH, oxidative stress, temperature)

A fast and memory-efficient FASTX PCR deduplication tool

Count the occurances of structured sequence reads and compare to an expected library

Deterministic Rust CLI for MMseqs2-like approximate high-throughput sequence clustering/search workflows.

High-performance Rust CLI to normalize molecular recorder outputs into the Cellular Event Log (CEL) format and build fast indices.

Read conventional genomic file formats as data frames and more via Apache Arrow.

FastQC-compatible QC tool written in Rust

Molecule data structures for computational chemistry and drug discovery

BAM/Mod BAM parsing and analysis tool with a single-molecule focus

Python bindings for microBioRust Microbiology friendly bioinformatics Rust functions

High-throughput, extensible SAM/BAM pileup generation library

CLI program to generate varying pileup-derived output formats for SAM and BAM

align sequencing reads using dynamic seed size with strobemers

Rust tools (with Python bindings) for sequence analysis

A viewer of multiple sequence alignments, with a text user interface