Science::Bioinformatics::Sequence Analysis

A nightly library for viral genomics

DNA, RNA, and amino acid sequence types and functions

Microbiology friendly bioinformatics Rust functions

fuzzyfold's nearest neighbor free energy evaluations.

Save and load common biology file formats

Read conventional genomic file formats as data frames and more via Apache Arrow.

fuzzyfold's stochastic secondary structure simulations.

fuzzyfold's secondary structure representations.

Nucleic acid secondary structure kinetics.

A library to handle proteomic mass spectrometry data and match peptides to spectra.

A viewer of multiple sequence alignments, with a text user interface

Generate images of the Arecibo message with a user-provided population and genome size

Bindings to the C library libsais for suffix array construction

Raw bindings to the C library libsais for suffix array construction

Python bindings for microBioRust Microbiology friendly bioinformatics Rust functions

Bit packed and well-typed biological sequences

A fast and memory-efficient FASTX PCR deduplication tool

A small and fast FM-Index implementation

Microbiology friendly bioinformatics Rust functions

Count the occurances of structured sequence reads and compare to an expected library

FastQC-compatible QC tool written in Rust

Pure‑Rust port of ntHash

Rust tools (with Python bindings) for sequence analysis

High-performance FASTQ reader with mmap-first design. Supports plain, gzip, and BGZF inputs; optional multi-line parsing; and explicit paired-end reading.

A tool for generating sequence locators for HIV/SIV sequences, resembling the functionality of the LANL HIV-Locator tool.

An implementation of the SAIS algorithm for suffix array construction

Unified short- and long-read sequence aligner written in Rust 2024. It combines minimap2-style minimizers and chaining with BWA-MEM2-style exact-match anchoring and output semantics. The goal is drop-in compatibility with bwa-mem pipelines while supporting long reads efficiently.

View, edit, and explore multiple sequence alignments in your terminal

Rust CLI for preprocessing single-cell RNA-seq count matrices.

Rust bindings for abPOA: Adaptive Banded POA

BAM/Mod BAM parsing and analysis tool with a single-molecule focus

Automatically generated FFI definitions for abPOA

fqkit: a simple and cross-platform program for fastq file manipulation

Microbiology friendly bioinformatics Rust functions

Package to download NCBI genome data and metadata

Align peptidoforms while with mass-based alignment.

Handle fragmentation of (complex) peptidoforms.

Core logic for handling massspectrometry in Rust.

Learn the properties of a FASTA sequence database and simulate sequences in a Markov process

Access the IMGT database from Rust

CLI tool for physics-informed protein robustness and fragility analysis under environmental conditions (pH, oxidative stress, temperature)

Rust implementation of strobemers

Rust bindings for the digest library

Convert an amino acid alignment into a nucleotide alignment.

Microbiology friendly bioinformatics Rust functions